miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|75460465|gb|DT768438.1|DT768438 CTAAACTCTCTTCTTCTCAAAAAATTAACAATGGCTTCAATGACTACTGCTTTCACTTCTCATCTTTCTTCCAAAATCAA
AACCCCTTTCTTAGATAACCAATCATCTTTCCATGTCACTCCATCTCGCATCCAACTCACTCGTTCATCTTCCCCAAACA
CTCACATCACCATGTCTTCATCATCATCATCATCATCTTCATCTTATGATCTATCTTCCTTCAAATTTGAACCAATTAAG
GAATCCATTGTATCACGTGAGATGACTCGCAGATACATGATGGATATGATTACATATGCTGACACTGATGTTGTTGTTGT
TGGAGCAGGTTCAGCAGGTCTTTCTTGTGCTTATGAAATGAGCAAAAACCCTAACATCAACATCGCTATTATCGAACAAT
CTGTCAGTCCTGGTGGTGGTGCTTGGTTAGGTGGTCAGCTTTTTTCTGCCATGGTTGTTCGCAAACCTGCTCACATCTTC
CTTGATGAACTCGGTGTTGAATACGATGAACAAGACACCTATGTTGTTATCAAGCACGCTGCCTTGTTTACATCCACAAT
CATGTCTAAGCTTTTGGCTAAACCAAATGTGAAACTTTTTAATGCTGTTGCTGCTGAGGATTTGATCGTGAAAGAAGGTA
AAGTTGCTGGGGTTGTCACAAATTGGGCTTTGGTTTCTATGAATCATGATACACAATCATGTATGGATCCAAATGTAATG
GAAGCTAAGATTGTTGTCAGTTCTTGTGGCCATGATGGTCCTTTTGGTGCTACTGGTGTGAAGAGGCTGAAGAGCATTGG
AATGATTGATTCTGTTCCTGGTATGAAAGCTCTTGATATGAATACTGCTGAAGATGCTATTGTCAGATTGACAAGAGAAA
TTGTTCCTGGGATGATTGTTACTGGGGATGGAAGTGGCTGAG




Most similar to sp|O23787|THI4_CITSI

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O23787|THI4_CITSI Thiazole biosynthetic enzyme, chloroplastic
           OS=Citrus sinensis GN=THI1 PE=2 SV=1
          Length = 356

 Score =  424 bits (1089), Expect = e-118
 Identities = 225/294 (76%), Positives = 238/294 (80%), Gaps = 2/294 (0%)
 Frame = +1

Query: 31  MASM-TTAFTSHLSSKIKTPFLDNQSSFHVTPSRIQLTRXXXXXXXXXXXXXXXXXXXXX 207
           MA+M +TAF   +SS     F    SSFH  P    L R                     
Sbjct: 1   MAAMASTAFAPSVSSTTNKLF---DSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPP 57

Query: 208 XXXX-FKFEPIKESIVSREMTRRYMMDMITYADTDXXXXGAGSAGLSCAYEMSKNPNINI 384
                FKF+PIKESIVSREMTRRYM DMITYADTD    GAGSAGLSCAYE+SKNPNI I
Sbjct: 58  YDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQI 117

Query: 385 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGVEYDEQDTYVVIKHAALFTSTIM 564
           AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELG++YDEQD YVVIKHAALFTSTIM
Sbjct: 118 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIM 177

Query: 565 SKLLAKPNVKLFNAVAAEDLIVKEGKVAGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSS 744
           SKLLA+PNVKLFNAVAAEDLIVK G+V GVVTNWALVSMNHDTQSCMDPNVMEAK+VVSS
Sbjct: 178 SKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS 237

Query: 745 CGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTG 906
           CGHDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTRE+VPGMIVTG
Sbjct: 238 CGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTG 291